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ERX2912766: HiSeq X Ten paired end sequencing
1 ILLUMINA (HiSeq X Ten) run: 874,536 spots, 264.1M bases, 106.1Mb downloads

Design: Illumina sequencing of library DN495288J:F1, constructed from sample accession ERS1909443 for study accession ERP021286. This is part of an Illumina multiplexed sequencing run (24276_3). This submission includes reads tagged with the sequence GCCAATGT.
Submitted by: Wellcome Sanger Institute
Study: Enteric_bacteria_in_Nairobi
show Abstracthide Abstract
A four year surveillance study in different parts of Nairobi (Kenya) where enteric diseases are common has been carried out. This surveillence includes both field (clinics, slums) and hospital admissions. Many isolates have been GPS mapped and have excellent metadata (antibiotic resistance, coinfections [parasites etc.]). Both blood and stool culture have been used and over 600 bacterial isolates have been identified. The aim of this project is to conduct whole genome sequencing on these isolates to facilitate phylogenetic and phylogeographical analysis as well as AMR work.
Sample: 4622STDY6861311
SAMEA104284465 • ERS1909443 • All experiments • All runs
Library:
Name: DN495288J:F1
Instrument: HiSeq X Ten
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Standard
Runs: 1 run, 874,536 spots, 264.1M bases, 106.1Mb
Run# of Spots# of BasesSizePublished
ERR2909606874,536264.1M106.1Mb2018-11-23

ID:
6816019

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